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CABANAnet – STC-CGIAR workshop: Analysis of high-throughput sequencing data for plant pathogen identification and assesment

This workshop is aimed at plant health students and scientists and will consist of theoretical, practicalwet-lab and bio-informatics dry-lab components to generate and analyze various plant pathogens.

  • Thecourse will include:
  • Nanopore sequencing wet-lab
  • Virus sequence assembly annotation
  • Bacterial genome sequencing, assembly and annotation
  • Amplicon sequencing for pathogen community analysis

Prerequisites: basic knowledge of English, basic knowledge of working in Unix environment (link to self-learning material), Google Colab (Google account)

This workshop will be delivered in English, however almost all our trainers are fluent Spanish speakers and can offer support where needed.

Date and venue: The workshop will take place between 5-9 February 2024 at Universidad Nacional Toribio
Rodríguez de Mendoza in Chachapoyas, Peru

Applications are open for researchers based in Latin America only.


DATE

05 – 09  February 2024


CONTACT

Viviana Infantas
v.infantas@cgiar.org


APPLICATION

Register here

Wilmer Cuellar
Senior Scientist – Crops for Nutrition & Health
Alliance of Bioversity International and CIAT

Segundo Fuentes
Associate Scientist
International Potato Center

Alejandra Gil-Ordóñez
Research Associate
Alliance of Bioversity International and CIAT

Myriam Izarra
Research Assistant
International Potato Center

Jan Kreuze
Leader, Crop and Systems Sciences Division
International Potato Center

Ana Maria Leiva
Senior Research Associate
Alliance Bioversity-CIAT

Jelmer Poelstra
Bioinformatics Research Scientist
MCIC Wooster

CABANAnet – STC-CGIAR workshop: Analysis of high-throughput sequencing data for plant pathogen identification and assesment

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