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Training on breeding data management with BreedBase

Access to high-quality data for decision-making plays a crucial role in modern plant breeding. Using digital and standardized approaches for data recording and centralized data storage is an effective way to increase heritability, response to selection and consequently expected genetic gains. The International Potato Center (CIP) in collaboration with the Boyce Thompson Institute is organizing a training on breeding data management with BreedBase funded by the Crops to End Hunger project (CtEH-14: Investing in (sweet)potato breeding networks to mitigate climate change) from 18 till 21 March 2024 at the CIP Headquarters in Lima, Peru.

The hands-on training will deal with many important aspects of plant breeding data management like the use of standard operating procedures (SOPs), the use of a single centralized database management system (BreedBase), and digital tools for data recording (e.g., phenotypic with Fieldbook App). The training will consist of theoretical and demonstration sessions followed by practical sessions where the participants will be working themselves with the digital tools and BreedBase. The main lectures will be in English but support during exercises and Q&A will be possible in Spanish or Portuguese.

Scientists from CGIAR centers, National Agricultural Research and Extension Systems (NARES) or Universities in the LAC region are encouraged to apply for participation through the registration form not later than January 26th, 2024. Acceptance for the workshop includes free participation, local travel in Peru, coffee breaks and lunch. Application for additional sponsorship for accommodation and travel is also possible through the registration form. The workshop will be promoting social inclusion and gender equality. To facilitate the latter specific requests will therefore be considered and granted if possible


APPLY UNTIL

26 January 2024


CONTACT

Rut Arteaga
rut.arteaga@cgiar.org


APPLY HERE

Registration form

Mirella Rocio Flores Gonzalez

Mirella Rocio Flores Gonzalez, an enthusiastic bioinformatician at Boyce Thompson Institute. I am passionate about using my computer science skills to contribute to the exciting technological advances in computational genomics and plant breeding. Along with genomics and omics data analysis for various crops, I contribute to the development of the Breedbase platform. Besides computers, I enjoy travelling and nature getaways.

Mirella Rocio Flores Gonzalez
Bioinformatician
Boyce Thompson Institute

Christiano Simoes

Christiano Simoes, a passionate Breedbase Developer and former plant breeder currently based in Ithaca, NY. With a background in genetics and bioinformatics, I thrive on tackling plant breeding challenges and exploring innovative solutions. Outside of work, I enjoy jogging and training for marathons, as well as soaking up the summer vibes in Brazil.

Christiano Simoes
Breedbase Developer

DAY 1

Welcome and Agenda
Bert

Short overview SOPs for breeding data management at CIP
Raul

Introduction to BreedBase: presenting basic principles: Access and accounts – Breeding Programs – Lists – Accessions – Locations
Chris

Hands-on excercises
Chris/Mirella

Traits – Trials (creating trials directly in Breedbase) – Trials details page – Search tools – Label printing
Chris

Hands-on excercises
Chris/Mirella

DAY 2

Phenotyping
Chris/Mirella/Maria

Hands-on excercises phenotyping
Chris/Mirella/Maria

NIRS and high dimensional data
Chris/Mirella/Maria

BrAPI tools
Mirella

DAY 3

Genotyping data
Mirella / Maria / Bert

Hands-on genotyping data
Mirella / Maria / Bert

Data curation in R and uploading existing designs to BreedBase
Raul

Analysis in BreedBase
Chris

DAY 4

Crossing data
Bert / Mirella

Hands-on excercises crossing data
Chris  / Mirella / Bert

Visit genebank and greenhouse/lab with focus on data management practices

Training on breeding data management with BreedBase

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